Plotting

Pyropython contains a rudimentary plotting tool to quickly inspect the experimental data, simulation results and goodness of fit. After runniong pyropython. You can plot the figures defined in the configuration file by typing

plot_pyro config.yml

at the command line. The plots are defined in the config.yml file under the plots keyword.

plots:
    plotname: {variables:
               labels:
               type:
               ylabel:
               xlabel:
              }

plots :noindex:

plotname

Name of the plotfile. This willcreate a file named “plotname.pdf” in Figs/ or CASENAME_Figs/.

variables

Variables to be plotted. The variable names are the same as those listed under simulation and experiment keywords :noindex:

labels

LAbels for the legend of the plot. For comparison plots, the labels will be appended with “exp” and “sim” for experimental data and simulation results, respectively

type

Type of plot. Choices are “comparison”, “simulation” and “experimental”. Comparison plots a comparison of the simulation results in Best/ (or CASENAME/) folder with experimental data. PLot type “simulation” plots only the simulation data. This is useful for checking gradient calculation etc. Plot type “experimental” plots the raw experimental data together with the filtered version. Useful for checking filtering ad other transformations.

xlabel

Label for the x-axis of the plot.

ylabel

Label for the y-axis of the plot.